bc_noneck_reduce: Bias Correct, Remove Neck, Reduce Image

Description Usage Arguments Value

View source: R/bc_noneck_reduce.R

Description

Bias Correct, Remove Neck, Reduce Image

Usage

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bc_noneck_reduce(x, remove_negative = TRUE, gold_standard = NULL,
  gs_space = NULL, reduce = TRUE, cleanup = 1, probs = c(0, 0.999),
  non_zero = TRUE, outdir = tempdir(), verbose = TRUE)

Arguments

x

List of images or character vector. Must be named with the imaging modalities.

remove_negative

Force values less than zero to zero

gold_standard

Gold Standard image/filename, if applicable

gs_space

space the Gold Standard is located

reduce

If TRUE, the image size will be reduced using reduce_img.

cleanup

Argument to oMask. If >0, morphological operations will be applied to clean up the mask by eroding away small or weakly-connected areas, and closing holes.

probs

passed to winsor for Winsorization

non_zero

Should zeroes be excluded from the calculation of quantiles? Passed to winsor.

outdir

Output directory

verbose

print diagnostic messages

Value

List of output filenames


neuroconductor/smri.process documentation built on Sept. 29, 2020, 2:32 p.m.