neurodata/lol
Linear Optimal Low-Rank Projection

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Linear Optimal Low-Rank Projection

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/bayes_optimal.R R/centroid.R R/dp.R R/embed.R R/lol.R R/lrcca.R R/pca.R R/plsda.R R/random_classifier.R R/rp.R R/simulations.R R/utils.R R/xval.R README.md
citation.bib
codecov.yml
docs/final_proj/generate_sims.R docs/final_proj/mnist.Rmd docs/final_proj/plot_sims.R docs/final_proj/run_sims.R docs/final_proj/ucca_fig.R docs/lol-paper/README.md
docs/lol-paper/data/colon/Colon.mat
docs/lol-paper/data/colon/X.txt
docs/lol-paper/data/colon/Y.txt
docs/lol-paper/data/flashlol/Datasets/Dataset-BNU1_flashlol.rds
docs/lol-paper/data/flashlol/Datasets/Dataset-BNU3_flashlol.rds
docs/lol-paper/data/flashlol/Datasets/Dataset-KKI2009_flashlol.rds
docs/lol-paper/data/flashlol/Datasets/Dataset-SWU4_flashlol.rds
docs/lol-paper/data/flashlol/Datasets/Dataset-Templeton114_flashlol.rds
docs/lol-paper/data/flashlol/flashlol_genomics.rds
docs/lol-paper/data/flashlol/flashlol_neuro.rds
docs/lol-paper/data/mnist/MNIST.mat
docs/lol-paper/data/real_data/LOL-MRN-40.csv
docs/lol-paper/data/real_data/PCA-LDA-MRN-40.csv
docs/lol-paper/data/real_data/RR-LDA-MRN-40.csv
docs/lol-paper/data/real_data/lda/LOL-MRN-40.csv
docs/lol-paper/data/real_data/lda/PCA-LDA-MRN-40.csv
docs/lol-paper/data/real_data/lda/RR-LDA-MRN-40.csv
docs/lol-paper/data/real_data/lda_results.rds
docs/lol-paper/data/sims/3trunk.mat
docs/lol-paper/data/sims/fat_tails.mat
docs/lol-paper/data/sims/lol_sims_ktrunk_lda.rds
docs/lol-paper/data/sims/lol_sims_lda.rds
docs/lol-paper/data/sims/r2toeplitz.mat
docs/lol-paper/data/sims/rtrunk.mat
docs/lol-paper/data/sims/toeplitz.mat
docs/lol-paper/docker/Dockerfile
docs/lol-paper/figures/data/colon/Colon.mat
docs/lol-paper/figures/data/colon/X.txt
docs/lol-paper/figures/data/colon/Y.txt
docs/lol-paper/figures/data/mnist/MNIST.mat
docs/lol-paper/figures/data/real_data/LOL-MRN-40.csv
docs/lol-paper/figures/data/real_data/PCA-LDA-MRN-40.csv
docs/lol-paper/figures/data/real_data/RR-LDA-MRN-40.csv
docs/lol-paper/figures/data/real_data/lda_results.rds
docs/lol-paper/figures/data/sims/3trunk.mat
docs/lol-paper/figures/data/sims/fat_tails.mat
docs/lol-paper/figures/data/sims/lol_sims_lda.rds
docs/lol-paper/figures/data/sims/r2toeplitz.mat
docs/lol-paper/figures/data/sims/rtrunk.mat
docs/lol-paper/figures/data/sims/toeplitz.mat
docs/lol-paper/figures/data_driver.R docs/lol-paper/figures/exp_resu.ts.pdf docs/lol-paper/figures/exp_results.pdf
docs/lol-paper/figures/exp_results.png
docs/lol-paper/figures/figure_2.Rmd docs/lol-paper/figures/figure_3.Rmd
docs/lol-paper/figures/figure_3.png
docs/lol-paper/figures/figure_3.svg
docs/lol-paper/figures/figure_3_lda.Rmd docs/lol-paper/figures/figure_4.Rmd docs/lol-paper/figures/figure_4_driver.R docs/lol-paper/figures/figure_5.Rmd
docs/lol-paper/figures/figure_6.png
docs/lol-paper/figures/figure_exp.pdf docs/lol-paper/figures/figure_lda_real.pdf docs/lol-paper/figures/figure_real_dat_lda.pdf docs/lol-paper/figures/minh_scratch_work.Rmd
docs/lol-paper/figures/pls_vs_lol.Rmdreal_data
docs/lol-paper/figures/pmlb_driver.R docs/lol-paper/figures/real_data.Rmd
docs/lol-paper/figures/real_data.html
docs/lol-paper/figures/sims_driver.R docs/lol-paper/figures/uci_driver.R
docs/lol-paper/flashR/Dockerfile
docs/lol-paper/flashR/MNI152_T1_1mm_brain_mask.nii.gz
docs/lol-paper/flashlol-figure/corr_driver.R
docs/lol-paper/flashlol-figure/flashLol.R docs/lol-paper/flashlol-figure/flashlol_chance.R docs/lol-paper/flashlol-figure/flashlol_corr_driver.R docs/lol-paper/flashlol-figure/flashlol_dmri.Rmd docs/lol-paper/flashlol-figure/flashlol_dmri_cohen.Rmd docs/lol-paper/real_dat-figure/real_data_cohen.Rmd docs/lol-paper/real_dat-figure/slopegraphs.Rmd docs/lol-paper/scratch/check_outliers.Rmd
docs/lol-paper/scratch/check_outliers.html
docs/lol-paper/scratch/check_qol.Rmd
docs/lol-paper/scratch/check_qol.html
docs/lol-paper/scratch/data/fig5/pls_v_lol_rf.rds
docs/lol-paper/scratch/exp_cmp.png
docs/lol-paper/scratch/exp_results.png
docs/lol-paper/scratch/flashlol.md
docs/lol-paper/scratch/loadmtx_mem.txt
docs/lol-paper/scratch/memlog.sh
docs/lol-paper/scratch/old_sims_driver.R docs/lol-paper/scratch/pls_lol_cmp.R docs/lol-paper/scratch/pls_scratch.R docs/lol-paper/scratch/pls_vs_lol.Rmd
docs/lol-paper/scratch/results_svd.rds
docs/lol-paper/scratch/svd_mem.txt
docs/lol-paper/scratch/test_flashx/flashx_sims.Rmd docs/lol-paper/scratch/test_flashx/flashx_sims.pdf
docs/lol-paper/scratch/test_flashx/flashx_sims.rds
docs/lol-paper/scratch/test_flashx/pcacheck_swu4.R docs/lol-paper/scratch/test_flashx/sims_flashx_test.R docs/lol-paper/sim-figure/figure_3.Rmd docs/lol-paper/sim-figure/khump_sim.R docs/lol-paper/sim-figure/sims_driver.R docs/lol-paper/uci-figure/lol_uci_driver.R docs/lol-paper/uci-figure/real_data.Rmd docs/lol-paper/uci-figure/real_data_cohen_kappa.Rmd docs/lol-paper/uci-figure/uci_chance.R docs/lol-paper/uci-figure/uci_driver.R
lol.Rproj
man/lol.classify.nearestCentroid.Rd man/lol.classify.rand.Rd man/lol.classify.randomChance.Rd man/lol.classify.randomGuess.Rd man/lol.embed.Rd man/lol.project.bayes_optimal.Rd man/lol.project.dp.Rd man/lol.project.lol.Rd man/lol.project.lrcca.Rd man/lol.project.lrlda.Rd man/lol.project.pca.Rd man/lol.project.pls.Rd man/lol.project.rp.Rd man/lol.sims.cigar.Rd man/lol.sims.cross.Rd man/lol.sims.fat_tails.Rd man/lol.sims.khump.Rd man/lol.sims.kident.Rd man/lol.sims.ktrunk.Rd man/lol.sims.mean_diff.Rd man/lol.sims.qdtoep.Rd man/lol.sims.random_rotate.Rd man/lol.sims.rev_rtrunk.Rd man/lol.sims.rotation.Rd man/lol.sims.rtrunk.Rd man/lol.sims.sim_gmm.Rd man/lol.sims.toep.Rd man/lol.sims.xor2.Rd man/lol.utils.decomp.Rd man/lol.utils.deltas.Rd man/lol.utils.info.Rd man/lol.utils.ohe.Rd man/lol.xval.eval.Rd man/lol.xval.optimal_dimselect.Rd man/lol.xval.split.Rd man/predict.nearestCentroid.Rd man/predict.randomChance.Rd man/predict.randomGuess.Rd tests/testthat.R tests/testthat/test-bayes-optimal.R tests/testthat/test-cca.R tests/testthat/test-centroid_classifier.R tests/testthat/test-dp.R tests/testthat/test-lda.R tests/testthat/test-lol.R tests/testthat/test-pca.R tests/testthat/test-pls.R tests/testthat/test-random_classifier.R tests/testthat/test-rp.R tests/testthat/test-simulations.R tests/testthat/test-xval.R vignettes/dp.Rmd vignettes/extend_classification.Rmd vignettes/extend_embedding.Rmd vignettes/lol.Rmd vignettes/lrcca.Rmd vignettes/lrlda.Rmd vignettes/nearestCentroid.Rmd vignettes/pca.Rmd vignettes/pls.Rmd vignettes/rp.Rmd vignettes/simulations.Rmd vignettes/xval.Rmd
neurodata/lol documentation built on March 3, 2021, 1:46 a.m.

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