Files in neurogenomics/CHAS
Cell type deconvolution of bulk tissue histone acetylomes from epigenetic data
.Rbuildignore
.gitignore
CHAS.Rproj
CHAS_workflow.pdf
CHAS_workflow.png
DESCRIPTION
LICENSE
NAMESPACE
R/.RData
R/CelltypeProportion.R
R/CelltypeScore.R
R/CelltypeSpecificPeaks.R
R/ConsensusPeaks.R
R/EntorhinalCortex_AD_H3K27ac_counts.R
R/EntorhinalCortex_AD_H3K27ac_peaks.R
R/ReadCounting.R
R/UnionPeaks.R
R/astro_H3K27ac_hg19.R
R/astro_H3K27ac_hg38.R
R/calculate_cpm.R
R/calculate_median_and_variability.R
R/mgl_H3K27ac_hg19.R
R/mgl_H3K27ac_hg38.R
R/neu_H3K27ac_hg19.R
R/neu_H3K27ac_hg38.R
R/olig_H3K27ac_hg19.R
R/olig_H3K27ac_hg38.R
R/plot_MF_groups.R
R/plot_MF_props.R
R/plot_celltype_annotations.R
R/plot_celltype_scores.R
R/plot_correlation.R
R/ref_H3K27ac_counts_hg19.R
R/ref_H3K27ac_counts_hg38.R
R/ref_H3K27ac_peaks_hg19.R
R/ref_H3K27ac_peaks_hg38.R
R/run_mf.R
R/select_signature_peaks.R
README.md
data/AD_pheno.rda
data/AD_unionCounts.rda
data/EntorhinalCortex_AD_H3K27ac_counts.rda
data/EntorhinalCortex_AD_H3K27ac_peaks.rda
data/astro_H3K27ac_hg19.rda
data/astro_H3K27ac_hg38.rda
data/mgl_H3K27ac_hg19.rda
data/mgl_H3K27ac_hg38.rda
data/neu_H3K27ac_hg19.rda
data/neu_H3K27ac_hg38.rda
data/olig_H3K27ac_hg19.rda
data/olig_H3K27ac_hg38.rda
data/ref_H3K27ac_counts_hg19.rda
data/ref_H3K27ac_counts_hg38.rda
data/ref_H3K27ac_peaks_hg19.rda
data/ref_H3K27ac_peaks_hg38.rda
docs/CHAS.Rmd
docs/CHAS.html
docs/unionPeaks.saf
man/.DS_Store
man/CelltypeProportion.Rd
man/CelltypeScore.Rd
man/CelltypeSpecificPeaks.Rd
man/ConsensusPeaks.Rd
man/EntorhinalCortex_AD_H3K27ac_counts.Rd
man/EntorhinalCortex_AD_H3K27ac_peaks.Rd
man/ReadCounting.Rd
man/UnionPeaks.Rd
man/astro_H3K27ac_hg19.Rd
man/astro_H3K27ac_hg38.Rd
man/calculate_cpm.Rd
man/calculate_median_and_variability.Rd
man/mgl_H3K27ac_hg19.Rd
man/mgl_H3K27ac_hg38.Rd
man/neu_H3K27ac_hg19.Rd
man/neu_H3K27ac_hg38.Rd
man/olig_H3K27ac_hg19.Rd
man/olig_H3K27ac_hg38.Rd
man/plot_MF_groups.Rd
man/plot_MF_props.Rd
man/plot_celltype_annotations.Rd
man/plot_celltype_scores.Rd
man/plot_correlation.Rd
man/ref_H3K27ac_counts_hg19.Rd
man/ref_H3K27ac_counts_hg38.Rd
man/ref_H3K27ac_peaks_hg19.Rd
man/ref_H3K27ac_peaks_hg38.Rd
man/run_mf.Rd
man/select_signature_peaks.Rd
