Man pages for neurogenomics/scFlowExamples
Provide example datsets to run scFlow
| downsample_cells | Downsample to get fewer cells from the specified cell type |
| ds_cell | Downsampling function for a single cell type |
| indvExp | Zeisel 2018 dataset for TEINH15, TEINH19, MGL1, MOL1 cells |
| indvExp_ds | Downsampled cells Zeisel 2018 dataset for TEINH15, TEINH19,... |
| indvExp_ds_4K | Downsampled cells and genes Zeisel 2018 dataset for TEINH15,... |
| merge_zeisel_celltypes | Given a list of data from each celltype, keep only the... |
| mouse_symbol_to_human_ensembl | Convert gene symbols from mouse to human and then to human... |
| mouseSymbol_to_humanEnsembl | Convert gene symbols from mouse to human and then to human... |
| prep_zeisel2018 | Prep the zeisel2018 dataset so that it is in sparse matrix... |
| split_celltypes_byIndv | #########################################################################... |
| write_data | Generate scFlowExample dataset for scFlow and nf-core-scflow |
| write_scflow_manifest | Write Manifest file to be run by scFlow and nf-core-scflow |
| write_scflow_samplesheet | Write SampleSheet file to be run by scFlow and nf-core-scflow |
