downsample_cells: Downsample to get fewer cells from the specified cell type
In neurogenomics/scFlowExamples: Provide example datsets to run scFlow
Description
Usage
Arguments
Author(s)
View source: R/downsample_cells.R
Description
Downsample to get fewer cells from the specified cell type
Usage
1
downsample_cells(keptExp, prop_cell = NULL, n_top_genes = NULL)
Arguments
keptExp
A dgCMatrix object where genes as rows and cells as
columns. Output from scFlowExamples::merge_zeisel_celltypes() function.
prop_cell
A vector containing cell proportion to downsample.
Should be of same length as the cell types in the dgCMatrix. Value
ranges between 0-1.
n_top_genes
Number of top variable genes to downsample. If NULL
all genes are returned.
Author(s)
Nurun Fancy n.fancy@imperial.ac.uk
neurogenomics/scFlowExamples documentation built on Dec. 22, 2021, 1:13 a.m.
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Description Usage Arguments Author(s)
View source: R/downsample_cells.R
Description
Downsample to get fewer cells from the specified cell type
Usage
1 | downsample_cells(keptExp, prop_cell = NULL, n_top_genes = NULL)
|
Arguments
keptExp |
A dgCMatrix object where genes as rows and cells as columns. Output from scFlowExamples::merge_zeisel_celltypes() function. |
prop_cell |
A vector containing cell proportion to downsample. Should be of same length as the cell types in the dgCMatrix. Value ranges between 0-1. |
n_top_genes |
Number of top variable genes to downsample. If NULL all genes are returned. |
Author(s)
Nurun Fancy n.fancy@imperial.ac.uk
R Package Documentation
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