prep_zeisel2018: Prep the zeisel2018 dataset so that it is in sparse matrix...

In neurogenomics/scFlowExamples: Provide example datsets to run scFlow

Description

prep_zeisel2018 Loads the Zeisel2018 dataset in Loom format and converts to sparse matrix

Usage

prep_zeisel2018(path)

Arguments

path	Path to the loom file

Value

A list containing $exp with the sparse matrix and $annot with annot data

Examples

## Not run: 
# create a temporary directory
td = tempdir()
 create the placeholder file
tf = tempfile(tmpdir=td, fileext=".zip")
download into the placeholder file
download.file("https://storage.googleapis.com/linnarsson-lab-loom/l5_all.loom", tf)
zeisel2018 = prep_zeisel2018()

## End(Not run)

neurogenomics/scFlowExamples documentation built on Dec. 22, 2021, 1:13 a.m.