makeAbundDataLong: Makes Long format Fauna abundance table

In nevilamos/FAMEFMR: Functions For DELWP FAME Fire Analysis

Makes Long format Fauna abundance table

Description

Makes Long format Fauna abundance table

Usage

makeAbundDataLong(
  AbundDataByGSFile = "./ReferenceTables/OrdinalExpertLong.csv",
  myEFG_TSF_4GS = EFG_TSF_4GS
)

Arguments

AbundDataByGSFile	.csv input file containing fields "EFG_NO", "GS4_NO", "FireType" , "Abund", "TAXON_ID" with Abund values for' both FireTypes for each growth stage "GS4_NO"
myEFG_TSF_4GS	table of each combination of "EFG_NO", "GS4_NO", and "YSF" generally read in at beginning of FAME in settings file

Details

Supporting function to Make long format table for fauna abundance scores by "TAXON_ID" ,FireType EFG and Growth Stage from input wide format table currently deals only with FireType of "High" and "Low" which are converted to 2 and 1 respectively

Value

long format table with one row for each combination of "EFG_NO", "GS4_NO", "FireType" , "Abund", "TAXON_ID" and "YSF" sorted by TAXON_ID

nevilamos/FAMEFMR documentation built on April 17, 2025, 9:32 p.m.