subset_pop: Subset a population object for specific individuals

In neyhartj/pbsim: Simulations of Plant Breeding Experiments

Subset a population object for specific individuals

Description

Subset a population object for specific individuals

Usage

subset_pop(pop, individual)

Arguments

pop	An object of class pop.
individual	A character of individuals to subset from the pop.

Details

If pheno_val is present in the pop, the variance components are dropped.

Examples

# Simulate a genome
n.mar  <- c(505, 505, 505)
len <- c(120, 130, 140)

genome <- sim_genome(len, n.mar)

# Simulate a quantitative trait influenced by 50 QTL
qtl.model <- matrix(NA, 50, 4)
genome <- sim_gen_model(genome = genome, qtl.model = qtl.model, 
                        add.dist = "geometric", max.qtl = 50)
                        
# Simulate the population
pop <- sim_pop(genome = genome, n.ind = 100)

# Subset the population
subset_pop(pop, c("ind001", "ind100"))
 

neyhartj/pbsim documentation built on Nov. 11, 2023, 4:07 p.m.