Files in nfj1380/mrIML
Multi Response Interpretable Machine Learning

.DS_Store
.Rbuildignore
.Rhistory
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/pkgdown.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/.gitignore
R/Features.R R/MrBootstrap.R R/MrFlashLight.R R/MrProfilePlots.R R/MrShapely.R R/ResistanceComponents.R R/Responsedata.R R/filterRareCommon.R R/gfData.R R/mrBenchmark.R R/mrCoOccurNet_bootstrap.R R/mrCovar.R R/mrIMLperformance.R R/mrIMLpredicts.R R/mrInteractions.R R/mrLocalExplainer.R R/mrPD_bootstrap.R R/mrPlotInteractions.R R/mrVariableSelect.R R/mrvip.R R/readSnpsPed.R README.Rmd README.md
README_files/figure-gfm/unnamed-chunk-7-1.png
README_files/figure-gfm/unnamed-chunk-8-1.png
README_files/figure-gfm/unnamed-chunk-8-2.png
README_files/figure-gfm/unnamed-chunk-8-3.png
README_files/figure-gfm/unnamed-chunk-8-4.png
_pkgdown.yml
data/Features.rda
data/Responsedata.rda
data/biosecurity_vignette_data.rda
data/gfData.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/Vignette_biosecurity.html
docs/articles/Vignette_biosecurity_files/figure-html/pdp-1.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-4-1.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-10.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-2.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-3.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-4.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-5.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-6.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-7.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-8.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-5-9.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Vignette_biosecurity_files/figure-html/unnamed-chunk-7-2.png
docs/articles/Vignette_biosecurity_files/figure-html/variable importance-1.png
docs/articles/Vignette_biosecurity_files/header-attrs-2.8/header-attrs.js
docs/articles/Vignette_classification.html
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-10-1.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-10-2.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-10-3.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-10-4.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-11-1.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-11-2.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-11-3.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-12-1.png
docs/articles/Vignette_classification_files/figure-html/unnamed-chunk-9-1.png
docs/articles/Vignette_classification_files/header-attrs-2.8/header-attrs.js
docs/articles/Vignette_regression.html
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-5-1.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-5-2.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-6-1.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-6-2.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-7-1.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-7-2.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-8-1.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-8-2.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-8-3.png
docs/articles/Vignette_regression_files/figure-html/unnamed-chunk-9-1.png
docs/articles/Vignette_regression_files/header-attrs-2.8/header-attrs.js
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Features.html
docs/reference/MrIMLconverts.html
docs/reference/Responsedata.html
docs/reference/Rplot001.png
docs/reference/devianceResids.html
docs/reference/figures/README-unnamed-chunk-10-1.png
docs/reference/figures/README-unnamed-chunk-10-2.png
docs/reference/figures/README-unnamed-chunk-10-3.png
docs/reference/figures/README-unnamed-chunk-7-1.png
docs/reference/figures/README-unnamed-chunk-7-2.png
docs/reference/figures/README-unnamed-chunk-7-3.png
docs/reference/figures/README-unnamed-chunk-8-1.png
docs/reference/figures/README-unnamed-chunk-8-2.png
docs/reference/figures/README-unnamed-chunk-9-1.png
docs/reference/figures/README-unnamed-chunk-9-2.png
docs/reference/figures/README-unnamed-chunk-9-3.png
docs/reference/figures/README-unnamed-chunk-9-4.png
docs/reference/figures/fig1.png
docs/reference/figures/logo.png
docs/reference/filterRareCommon.html
docs/reference/gfData.html
docs/reference/index.html
docs/reference/interpret_Mrvi.html
docs/reference/mrBenchmark.html
docs/reference/mrFlashlight.html
docs/reference/mrIMLperformance.html
docs/reference/mrIMLpredicts.html
docs/reference/mrInteractions.html
docs/reference/mrLocalExplainer.html
docs/reference/mrPlot_interactions.html
docs/reference/mrProfile2D.html
docs/reference/mrProfileplot.html
docs/reference/mrVip.html
docs/reference/plot_vi.html
docs/reference/plot_vi_biosecurity.html
docs/reference/readSnpsPed.html
docs/reference/resist_components.html
docs/reference/vintTidy.html
docs/sitemap.xml
inst/extdata/GF SNPs posBinary.csv
inst/extdata/Landscape and host data.csv
inst/extdata/Landscape and host data.xlsx
inst/extdata/Simulation02_xdara.csv
inst/extdata/Simulation02_ydata.csv
inst/extdata/SimulationData01.csv
inst/extdata/SiteWS.csv
inst/extdata/grid101_binary.csv
inst/extdata/poplarSNP.ENV.data.4.GF.csv
man/Features.Rd man/MrShapely.Rd man/Responsedata.Rd
man/figures/README-unnamed-chunk-10-1.png
man/figures/README-unnamed-chunk-10-2.png
man/figures/README-unnamed-chunk-10-3.png
man/figures/README-unnamed-chunk-7-1.png
man/figures/README-unnamed-chunk-7-2.png
man/figures/README-unnamed-chunk-7-3.png
man/figures/README-unnamed-chunk-8-1.png
man/figures/README-unnamed-chunk-8-2.png
man/figures/README-unnamed-chunk-9-1.png
man/figures/README-unnamed-chunk-9-2.png
man/figures/README-unnamed-chunk-9-3.png
man/figures/README-unnamed-chunk-9-4.png
man/figures/fig1.png
man/figures/logo.png
man/filterRareCommon.Rd man/gfData.Rd man/mrBenchmark.Rd man/mrBootstrap.Rd man/mrCoOccurNet_bootstrap.Rd man/mrFlashlight.Rd man/mrIMLperformance.Rd man/mrIMLpredicts.Rd man/mrInteractions.Rd man/mrLocalExplainer.Rd man/mrPD_bootstrap.Rd man/mrPlot_interactions.Rd man/mrProfileplot.Rd man/mrVariableSelect.Rd man/mrVip.Rd man/mr_Covar.Rd man/readSnpsPed.Rd man/resist_components.Rd
mrIML.Rproj
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
vignettes/Troubleshooting.Rmd vignettes/Vignette_GNN.Rmd vignettes/Vignette_LandscapeGenetics.Rmd vignettes/Vignette_biosecurity.Rmd vignettes/Vignette_classification.Rmd vignettes/Vignette_regression.Rmd
nfj1380/mrIML documentation built on May 17, 2024, 7:41 a.m.