Man pages for nfj1380/mrIML
Multi Response Interpretable Machine Learning
| Features | Landscape and host feature (variable) data |
| filterRareCommon | Filter rare response variables from the data |
| gfData | Regression data from Fitzpatrick et al 2014 |
| mrBenchmark | Compare and benchmark disease outbreak risk among and within... |
| mrBootstrap | Bootstrap model predictions |
| mrCoOccurNet_bootstrap | Generate a MrIML co-occurrence network |
| mr_Covar | Calculate covariate partial dependencies for mrIML JSDMs... |
| mrFlashlight | mrFlashlight: Wrapper to run multi-response model agnostic... |
| mrIMLperformance | Wrapper to calculate performance metrics (Mathews correlation... |
| mrIMLpredicts | Wrapper to generate multi-response predictive models. |
| mrInteractions | Calculate and visualize feature interactions |
| mrLocalExplainer | Run local explanation methods for individual data points |
| mrPD_bootstrap | Bootstrap Partial Dependence plots |
| mrPlot_interactions | Plots global interactions as well as individual response... |
| mrProfileplot | mrProfileplot: Wrapper to plot mutlti-response model agnostic... |
| MrShapely | Generate SHAP (SHapley Additive exPlanations) Plots for... |
| mrVariableSelect | Multiple Response Variable Selection |
| mrVip | Calculates and helps interpret variable importance for mrIML... |
| readSnpsPed | Conversion to single column per locus from plink file via LEA... |
| resist_components | Calculates resistance components from a list of pairwise... |
| Responsedata | Viral single nucleuotide polymorphism (SNP) data. |
