Man pages for nicholasjclark/BBS.occurrences
BBS community composition and co-occurrence analysis
| BBS.abundances | Compiled data on avian species abundances at NA BBS sites... |
| BBS.occurrences | Compiled data on avian species occurrences at NA BBS sites... |
| Bird.ecol.distances | Functional pairwise distance matrix for all avian species... |
| Bird.phy.distances | Phylogenetic pairwise distance matrix for all avian species... |
| Bird.traits | Information on avian species' migratory status (extracted... |
| BirdTree.syns | Synonyms for avian species, along with their matching... |
| cleanStormData | Clean downloaded NOAA storm data and return the top... |
| createRegions | Use hierarchical clustering to group sites into... |
| hurdleModel | Run binomial logistic models to predict species' occurrences... |
| lassoBinomial | Perform LASSO regularized logistic regressions to model the... |
| lassoGaussian | Perform LASSO regularized gaussian regressions to model the... |
| meanPRISM | Extract mean monthly PRISM climate values for buffers around... |
| networkBetaOS | Calculate turnover in predicted species interaction networks |
| networkModel | Run linear mixed models to identify predictors of species'... |
| plotBinomial | Construct regression plots of species' pairwise influences on... |
| plotGaussian | Construct regression plots of species' pairwise influences on... |
| predictlassoBinomial | Predict binomial outcomes from a fitted lassoBinomial_comm... |
| prepDendrograms | Create a multivariate functional similarity dendrogram for... |
| processAltitudes | Extract mean altitude within a 40km buffer for lat and long... |
| processNDVI | Extract mean summer NDVI values for buffers around lat/long... |
| processPRISM | Process mean monthly PRISM climate values into binned... |
| Site.descriptors | Site - level covariates for the NA BBS observations |
| Storm.data | Descriptions and locations of damaging storms in the USA |
| USGS.bird.names | USGS codes for avian species names |
| validateSpecies | Determines if a species is considered "valid" by looking at... |
