nickbrazeau/NFBtools
Miscellaneous tools for the IDEEL group

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vcffilter_info: vcfR2vcffilter_INFO

vcffilter_info: vcfR2vcffilter_INFO
In nickbrazeau/NFBtools: Miscellaneous tools for the IDEEL group

Description Usage Arguments

Description

vcfR2vcffilter_INFO

Usage

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vcffilter_info(vcfRobject = NULL, infoMQ = NULL, infoQD = NULL,
  infoSOR = NULL, infoAF = NULL, infoDP = NULL, infoFS = NULL,
  infoMQRankSum = NULL, infoReadPosRankSum = NULL, biallelic = TRUE,
  SNPs = TRUE)

Arguments

infoDP

options is based on a percentile cutoff. As a result, if you specify 0.1, the top and bottom 10th read depth percentiles will be excluded


nickbrazeau/NFBtools documentation built on May 17, 2019, 6:37 a.m.

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