get_effective_coi: Extract Effective COI by Loci from SWF Simulation for a...
In nickbrazeau/polySimIBD: Structured Wright Fisher Simulator for Malaria Genetics
get_effective_coi R Documentation
Extract Effective COI by Loci from SWF Simulation for a Single Host
Description
From a single host in a SWF Simulation, extract the effective COI
for loci within the ARG. Effective COI is defined as the number of non-coalesced genomes
at the end of tlim. Note, this framework is an independent process for each recombination event
and thus will vary along the simulated genome (but not necessarily by locus).
Usage
get_effective_coi(swf, host_index = NULL)
Arguments
swf
result of forwards simulation using the function sim_swf()
host_index
a vector of target hosts. Defaults to all hosts
Details
Function limited to a single host per "realization"
Value
vector of effective COI by loci
nickbrazeau/polySimIBD documentation built on Sept. 26, 2024, 5:29 p.m.
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| get_effective_coi | R Documentation |
Extract Effective COI by Loci from SWF Simulation for a Single Host
Description
From a single host in a SWF Simulation, extract the effective COI
for loci within the ARG. Effective COI is defined as the number of non-coalesced genomes
at the end of tlim. Note, this framework is an independent process for each recombination event
and thus will vary along the simulated genome (but not necessarily by locus).
Usage
get_effective_coi(swf, host_index = NULL)
Arguments
swf |
result of forwards simulation using the function |
host_index |
a vector of target hosts. Defaults to all hosts |
Details
Function limited to a single host per "realization"
Value
vector of effective COI by loci
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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