check_in: Check the proportion of species that are annotated in the...

In nickilott/MDAT: microbe directory association tester

Description

This function takes the microbe directory dataframe and the species list as input. It reports the proportion of species in the input list that are present in the microbe directory. If the parameter guess_names == TRUE then it will try and guess names of the input to match the microbe directory. The function returns the species list (revised or original depending if names were guessed)

Usage

check_in(microbe_directory = microbe_directory,
  species_list = species_list, guess_names = TRUE)

Arguments

microbe_directory

species_list guess_names

Examples

check_in(microbe_directory=microbe_directory, species_list=species_list, guess_names=TRUE)

nickilott/MDAT documentation built on Sept. 7, 2020, 7:03 a.m.