mapAgeEnsembleToPaleoData: Map an ageEnsemble variable from a chron model to a...

In nickmckay/GeoChronR: Tools to Analyze and Visualize Time-Uncertain Data

Map an ageEnsemble variable from a chron model to a paleoMeasurement Table

Description

Copies an ageEnsemble from chronData (model) to paleoData (measurementTable), by matching depth and interpolating (extrapolating) as necessary.

Usage

mapAgeEnsembleToPaleoData(
  L,
  age.var = "ageEnsemble",
  chron.depth.var = "depth",
  paleo.depth.var = "depth",
  paleo.age.var = "age",
  map.median = NA,
  paleo.num = NA,
  paleo.meas.table.num = NA,
  chron.num = NA,
  model.num = NA,
  ens.table.num = 1,
  max.ens = NA,
  strict.search = FALSE
)

Arguments

L	A LiPD object - an R serialization of a single LiPD file. It's a list, and is typically created by 'readLipd()'
age.var	name of the age ensemble variable to search for
chron.depth.var	name of the depth variable to search for in the ensemble table
paleo.depth.var	name of the depth variable to search for in the paleo measurement table
paleo.age.var	name of the age variable to search for in the paleo measurement table, critical if no depth data are available
map.median	Do you want to also map the median of the ageEnsemble to paleoData? (TRUE or FALSE, or NA, the default, which will do so unless that variable already exists)
paleo.num	an integer that corresponds to paleo.numData object (L$paleoData[[?]]) has the measurementTable you want to modify
paleo.meas.table.num	an integer that corresponds to paleo.num measurementTable you want to add the ensemble to?
chron.num	an integer that corresponds to chron.numData object (L$chronData[[?]]) has the model you want to get the ensemble from
model.num	an integer that corresponds to chron.num model you want to get the ensemble from?
ens.table.num	an integer that corresponds to ensembleTable you want to get the variable from?
max.ens	Maximum number of ensemble members to map
strict.search	Use a strict.search to look for the ageEnsemble and depth variables. TRUE(default) or FALSE.

Value

L a lipd object

See Also

Other LiPD manipulation: createConcatenatedEnsembleMeasurementTable(), createModel(), createMultiModelEnsemble(), createSummaryTableFromEnsembleTable(), createTSid(), estimateUncertaintyFromRange(), getVariableIndex(), pullTsVariable(), selectData()

nickmckay/GeoChronR documentation built on April 9, 2024, 5:26 a.m.