do_GSEA_topGO: Performs gene set enrichment on numeric protein vector with...
In nicohuttmann/pOmics: Framework for proteomics data analysis
View source: R/do_GSEA_topGO.R
do_GSEA_topGO R Documentation
Performs gene set enrichment on numeric protein vector with specified Ontology
Description
Performs gene set enrichment on numeric protein vector with specified Ontology
Usage
do_GSEA_topGO(
proteins,
ontology = "CC",
algorithm = "classic",
threshold = 0.05,
add.info = F
)
Arguments
proteins
numeric score vector
ontology
GO ontology
algorithm
algorithm to use ("classic", "elim", "weight", "weight01")
add.info
Add additional information (takes longer)
pvalueCutoff
p-value cutoff for annotations
nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.
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View source: R/do_GSEA_topGO.R
| do_GSEA_topGO | R Documentation |
Performs gene set enrichment on numeric protein vector with specified Ontology
Description
Performs gene set enrichment on numeric protein vector with specified Ontology
Usage
do_GSEA_topGO( proteins, ontology = "CC", algorithm = "classic", threshold = 0.05, add.info = F )
Arguments
proteins |
numeric score vector |
ontology |
GO ontology |
algorithm |
algorithm to use ("classic", "elim", "weight", "weight01") |
add.info |
Add additional information (takes longer) |
pvalueCutoff |
p-value cutoff for annotations |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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