do_ORA_topGO: Performs overexpression enrichment on logical protein vector...
In nicohuttmann/pOmics: Framework for proteomics data analysis
do_ORA_topGO R Documentation
Performs overexpression enrichment on logical protein vector with specified GO ontology
Description
Performs overexpression enrichment on logical protein vector with specified GO ontology
Usage
do_ORA_topGO(
proteins,
ontology = "CC",
algorithm = "classic",
threshold = 0.05,
dataset,
add.info = F
)
Arguments
proteins
character vector
ontology
GO ontology
algorithm
algorithm to use ("classic", "elim", "weight", "weight01")
threshold
p-value/confidence threshold to exclude terms
dataset
dataset
add.info
Add additional information (takes longer)
nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.
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| do_ORA_topGO | R Documentation |
Performs overexpression enrichment on logical protein vector with specified GO ontology
Description
Performs overexpression enrichment on logical protein vector with specified GO ontology
Usage
do_ORA_topGO( proteins, ontology = "CC", algorithm = "classic", threshold = 0.05, dataset, add.info = F )
Arguments
proteins |
character vector |
ontology |
GO ontology |
algorithm |
algorithm to use ("classic", "elim", "weight", "weight01") |
threshold |
p-value/confidence threshold to exclude terms |
dataset |
dataset |
add.info |
Add additional information (takes longer) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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