enrich_dend_: Calculates enrichment for each cluster level

In nicohuttmann/pOmics: Framework for proteomics data analysis

Calculates enrichment for each cluster level

Description

Calculates enrichment for each cluster level

Usage

enrich_dend_(
  cor_list,
  proteins,
  n = 10,
  inverse = F,
  name,
  cut = T,
  plot.lines = F,
  plot.matrix = T,
  labels,
  fun.enrich = F,
  database = "GO",
  algorithm = "weight01",
  add.info = F
)

Arguments

cor_list	cor_list object
proteins	annotated proteins or protein score vector
n	max number of clusters
inverse	inverse enrichment (works for both Fisher and KS test)
name	name
cut	cut dendrogram
plot.lines	Plot lines plot
plot.matrix	Plot correlation matrix
labels	proteins to label on y-axis
fun.enrich	Do functional enrichment
database	databases to use for functional enrichment
algorithm	algorithm to use ("classic", "elim", "weight", "weight01")
add.info	adds protein information to fun enrich tables

nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.