plot_count_id_quant: Barplot of identified/quantified proteins per sample

In nicohuttmann/pOmics: Framework for proteomics data analysis

Barplot of identified/quantified proteins per sample

Description

Barplot of identified/quantified proteins per sample

Usage

plot_count_id_quant(
  data_,
  labels,
  order.by,
  color.by = "All",
  color = list(all = c("#6BAED6", "#2171B5")),
  show.average.line,
  custom.theme = theme_phosprot_half_open,
  xlab = NULL,
  ylab = "# of proteins",
  limit.y.top,
  aspect.ratio = 0.66,
  dataset,
  input = "data_count_id_quant",
  output = "plot_count_id_quant",
  View = T
)

Arguments

data_	data_ list
labels	column name for labels
order.by	order.by factor levels of specified column
color.by	column to use for coloring (default is "All" - column will added automatically)
color	list containing vectors of length two (first color id, second quant) for each group
show.average.line	if column name specified, draws average lines
xlab	label of x-axis
ylab	label of y-axis
limit.y.top	upper limit of y-axis
aspect.ratio	y/x ratio of plot axis
input	name of id_quant data
output	name of plot data
View	print plot

nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.