plot_gg_xy_fc: Compares log2 fold-changes between two comparisons from an...

In nicohuttmann/pOmics: Framework for proteomics data analysis

Compares log2 fold-changes between two comparisons from an anova_eval data list

Description

Compares log2 fold-changes between two comparisons from an anova_eval data list

Usage

plot_gg_xy_fc(
  data_,
  x,
  y,
  x.threshold = 0,
  y.threshold = 0,
  aspect.ratio = 1,
  plot.center = c(0, 0),
  point.size = c(0.5, 0.5, 1),
  color.not = "grey",
  color.up = "red",
  color.down = "blue",
  color.mixed = "violet",
  x.axis.limits,
  y.axis.limits,
  x.axis.breaks = 1,
  y.axis.breaks = 1,
  custom.theme = theme_hjv_framed,
  ...
)

Arguments

data_	data list from anova_eval
x	comparison on x-axis
y	comparison on y-axis
x.threshold	absolute value for fold-change threshold lines
y.threshold	absolute value for fold-change threshold lines
aspect.ratio	absolute length of x-axis/y-axis
plot.center	position of plot center
point.size	vector specifying size of unsignificant, significant in 1, and significant in both proteins
color.not	color of not significant proteins
color.up	color of upregulated proteins
color.down	color of downregulated proteins
color.mixed	color of both up- and downregulated proteins
x.axis.limits	set limit of x-axis manually
y.axis.limits	sets limits of y-axis manually
x.axis.breaks	distance between breaks of x-axis ticks
y.axis.breaks	distance between breaks of y-axis ticks
custom.theme	theme to use for plot
...	arguments for custom.theme

nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.