select_org: Queries data from Annotation packages

In nicohuttmann/pOmics: Framework for proteomics data analysis

Queries data from Annotation packages

Description

Queries data from Annotation packages

Usage

select_org(keys, columns, output = "vector.keep", keytype, OrgDb, dataset, ...)

Arguments

keys	vector of protein identifiers (see keytypes_org())
columns	data columns to return(see columns_org())
output	format of output ("vector.keep" (default), "vector.na, "vector.rm", "mapping.na", "mapping.rm", "TERM2GENE")
keytype	type of supplied keys (identified automatically if not provided)
OrgDb	string of Annotation package name to use
dataset	dataset
...	arguments for TERM2GENE function (subtype = "CC", "BP", or "MF")

nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.