translate_Ids: Translates biological IDs using annotations packages

In nicohuttmann/pOmics: Framework for proteomics data analysis

Translates biological IDs using annotations packages

Description

Translates biological IDs using annotations packages

Usage

translate_Ids(
  Ids,
  fromType = "UNIPROT",
  toType,
  OrgDb,
  dataset,
  drop = F,
  fill.missing = "initial",
  save = T,
  silent = T
)

Arguments

Ids	Ids
fromType	type of given Ids
toType	type Ids should be translated to
OrgDb	name of organism database to use; defined by setup_annotations()
dataset	dataset
drop	drop missing translations
fill.missing	How to handle missing Ids. By default, given Ids are filled in, other characters or NA can be used
save	translated Ids in variables data frame for next time (all Ids in dataset will be translated)
silent	suppress all messages

nicohuttmann/pOmics documentation built on Sept. 21, 2022, 9:28 a.m.