Oyster_el_time: Calculate concentrations of trace elements per sub-increment

In nielsjdewinter/ShellTrace: Bivalve Growth and Trace Element Accumulation Model

Description

Function that takes the matrix of phase pixels per sub-increment together with the matrix of concentrations per phase to calculate the concentration of each trace element in every sub-increment. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>

Usage

Oyster_el_time(phase_mat, phases)

Arguments

phase_mat	Matrix of amounts of pixels of each phase per sub-increment
phases	Matrix containing colour and trace element data of the phases in the XRF phase map

Details

For every sub-increment, the relative contribution of phases is multiplied with the trace element concentrations of the phases to calculate the average concentration of trace elements in each sub-increment

Value

Matrix of trace element concentrations per sub-increment

el_time

Matrix of trace element concentrations through time

Note

Please cite Geoscientific Model Development paper dealing with the ShellTrace model

Author(s)

Niels J. de Winter

Source

GitHub
Manuscript
Supplementary data
Author website

References

de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.

See Also

"Oyster_Volumes"

Examples

  el_time<-Oyster_el_time(phase_mat, O1_phase)

nielsjdewinter/ShellTrace documentation built on May 7, 2019, 2:55 a.m.