Oyster_subincr_phases: Calculates proportion of phases in each sub-increment

In nielsjdewinter/ShellTrace: Bivalve Growth and Trace Element Accumulation Model

Description

Function that takes the matrix of sub-increment positions and the matrix of phases and calculates the amount of pixels of each phase that is contained in each sub-increment based on pixelsize and phase characteristics. de Winter, N. J. (2017) <doi:10.5194/gmd-2017-137>

Usage

Oyster_subincr_phases(IncG, phasemat, pixelsize, phases)

Arguments

IncG	Matrix of X- and Y-coordinates of all interpolated sub-increments
phasemat	matrix of phases of each pixel sorted by X- and Y-coordinate of the pixel
pixelsize	size of pixels in the phase map in millimeter
phases	Matrix containing colour and trace element data of the phases in the XRF phase map

Details

For every sub-increment, all pixels that cover area in the sub-increment are identified based on the pixel size of the phase map and the X- and Y-positions of the sub-increments. The amount of pixels of each phase in the sub-increment is saved in a new matrix of phases per sub-increment

Value

A matrix of the amount of pixels for each phase found in every sub-increment

phase_mat

Matrix of amounts of pixels of each phase per sub-increment

Note

Please cite Geoscientific Model Development paper dealing with the ShellTrace model

Author(s)

Niels J. de Winter

Source

GitHub
Manuscript
Supplementary data
Author website

References

de Winter, N. J.: ShellTrace v1.0 ? A new approach for modelling growth and trace element uptake in marine bivalve shells: Model verification on pacific oyster shells (Crassostrea gigas), Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2017-137, in review, 2017.

See Also

"Oyster_Suby_av_thickness"

Examples

  ## Not run: 
    phase_mat<-Oyster_subincr_phases(IncG, phasemat, pixelsize, O1_phase)
  
## End(Not run)

nielsjdewinter/ShellTrace documentation built on May 7, 2019, 2:55 a.m.