comp_complete_bam: Complete a length or age composition data frame so that all...

In nikolaifish/bamExtras: Functions and Data in Support of Stock Assessments with the Beaufort Assessment Model (BAM)

Complete a length or age composition data frame so that all have desired dimensions

Description

Complete a length or age composition data frame so that all have desired dimensions. This is a modified version of comp_complete. The two functions should probably be combined with options to choose between sub-functions.

Usage

comp_complete_bam(
  comp_mat,
  n_colnames = NULL,
  val_rownames = NULL,
  val_colnames = NULL,
  minusGroup = FALSE,
  plusGroup = FALSE
)

Arguments

comp_mat:	comp matrices, where column names are sample size columns (e.g. n.fish, n.trips) as well as bin values (e.g. length or age), and rows are unique observations (e.g. years)
n_colnames:	column names for sample size columns
val_rownames:	row names you want to have included in each comp matrix
val_colnames:	column names you want to have included in each comp matrix (excluding sample size columns)
minusGroup:	logical. When truncating bin range, should values below the smallest bin be summed into the smallest bin? The default is to simply truncate.
plusGroup:	logical. When truncating bin range, should values above the largest bin be summed into the largest bin? The default is to simply truncate.

Author(s)

Nikolai Klibansky

nikolaifish/bamExtras documentation built on July 21, 2023, 8:26 a.m.