CommonFeatures-tpcaResult-method: Extract CommonFeatures

In nkurzaw/Rtpca: Thermal proximity co-aggregation with R

Extract CommonFeatures

Description

Extract CommonFeatures

Usage

## S4 method for signature 'tpcaResult'
CommonFeatures(object)

Arguments

object

and object of class tpcaResult

Value

a vector of common features across replicates

Examples

m1 <- matrix(1:12, ncol = 4)
m2 <- matrix(2:13, ncol = 4)
m3 <- matrix(c(2:10, 1:7), ncol = 4)

rownames(m1) <- 1:3
rownames(m2) <- 2:4
rownames(m3) <- 2:5

mat_list <- list(
    m1, m2, m3
)

ppi_anno <- tibble(
    x = "2",
    y = "3",
    combined_score = 700,
    pair = "2:3")

tpcaObj <- runTPCA(
    objList = mat_list,
    complexAnno = NULL,
    ppiAnno = ppi_anno
)

CommonFeatures(tpcaObj)

nkurzaw/Rtpca documentation built on May 12, 2023, 2:10 p.m.