Files in nkurzaw/Rtpca
Thermal proximity co-aggregation with R
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/data.R
R/functions.R
R/tpcaResult-class.R
README.Rmd
README.md
data/ori_et_al_complex_ppis.rda
data/ori_et_al_complexes_df.rda
data/string_ppi_df.rda
inst/CITATION
inst/figures/README-unnamed-chunk-12-1.png
inst/figures/README-unnamed-chunk-13-1.png
inst/figures/README-unnamed-chunk-15-1.png
inst/figures/README-unnamed-chunk-17-1.png
man/CommonFeatures-tpcaResult-method.Rd
man/ComplexAnnotation-tpcaResult-method.Rd
man/ComplexBackgroundDistributionList-tpcaResult-method.Rd
man/ComplexRocTable-tpcaResult-method.Rd
man/ContrastCondName-tpcaResult-method.Rd
man/ContrastDistMat-tpcaResult-method.Rd
man/ContrastList-tpcaResult-method.Rd
man/CtrlCondName-tpcaResult-method.Rd
man/DistMat-tpcaResult-method.Rd
man/DistMethod-tpcaResult-method.Rd
man/ObjList-tpcaResult-method.Rd
man/PPiAnnotation-tpcaResult-method.Rd
man/PPiRocTable-tpcaResult-method.Rd
man/PPiRocTableAnno-tpcaResult-method.Rd
man/SetCommonFeatures-tpcaResult-method.Rd
man/SetComplexAnnotation-tpcaResult-method.Rd
man/SetComplexBackgroundDistributionList-tpcaResult-method.Rd
man/SetComplexRocTable-tpcaResult-method.Rd
man/SetContrastCondName-tpcaResult-method.Rd
man/SetContrastDistMat-tpcaResult-method.Rd
man/SetCtrlCondName-tpcaResult-method.Rd
man/SetDiffTpcaResultTable-tpcaResult-method.Rd
man/SetDistMat-tpcaResult-method.Rd
man/SetDistMethod-tpcaResult-method.Rd
man/SetPPiRocTable-tpcaResult-method.Rd
man/SetPPiRocTableAnno-tpcaResult-method.Rd
man/SetSummaryMethod-tpcaResult-method.Rd
man/SetTpcaResultTable-tpcaResult-method.Rd
man/SummaryMethod-tpcaResult-method.Rd
man/createDistMat.Rd
man/diffTpcaResultTable-tpcaResult-method.Rd
man/ori_et_al_complex_ppis.Rd
man/ori_et_al_complexes_df.Rd
man/plotComplexRoc.Rd
man/plotDiffTpcaVolcano.Rd
man/plotPPiProfiles.Rd
man/plotPPiRoc.Rd
man/plotTpcaVolcano.Rd
man/runDiffTPCA.Rd
man/runTPCA.Rd
man/string_ppi_df.Rd
man/tpcaResult-class.Rd
man/tpcaResultTable-tpcaResult-method.Rd
tests/testthat.R
tests/testthat/test-checkAnnoArguments.R
tests/testthat/test-checkMatDims.R
tests/testthat/test-combineCondDistMatsFstat.R
tests/testthat/test-createBackgroundDistList.R
tests/testthat/test-createDistMat.R
tests/testthat/test-createDistMatTpcaObj.R
tests/testthat/test-distMat2AnnotatedPPiDf.R
tests/testthat/test-filterDistMat.R
tests/testthat/test-getCommonRownames.R
tests/testthat/test-getMatList.R
tests/testthat/test-getSummarizedMat.R
tests/testthat/test-intersectComplexAnnotation.R
tests/testthat/test-plotDiffTpcaVolcano.R
tests/testthat/test-plotPPiProfiles.R
tests/testthat/test-plotPPiRoc.R
tests/testthat/test-plotTpcaVolcano.R
tests/testthat/test-runDiffTPCA.R
tests/testthat/test-runTPCA.R
tests/testthat/test-sampleBackgroundDistribution.R
tests/testthat/test-tpcaResult-class-generic-CommonFeatures.R
tests/testthat/test-tpcaResult-class-generic-ObjList.R
vignettes/Rtpca.Rmd
vignettes/cell.csl
vignettes/refs.bib
