tests/testthat/test_rlog.R
In nlhuong/ZeroInflatedDESeq2: Differential gene expression analysis based on the negative binomial distribution
# test fast
dds <- makeExampleDESeqDataSet(n=1000, m=20)
rld <- rlog(dds, fast=TRUE)
# expect warning on sparsity and large counts
dds <- makeExampleDESeqDataSet(n=100, m=20)
idx <- sample(ncol(dds), nrow(dds)/2, TRUE)
counts(dds)[cbind(1:(nrow(dds)/2), idx)] <- 10000L
mcols(dds)$dispFit <- .5
expect_warning({ rld <- rlog(dds, blind=FALSE) })
nlhuong/ZeroInflatedDESeq2 documentation built on May 23, 2019, 9:06 p.m.
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# test fast
dds <- makeExampleDESeqDataSet(n=1000, m=20)
rld <- rlog(dds, fast=TRUE)
# expect warning on sparsity and large counts
dds <- makeExampleDESeqDataSet(n=100, m=20)
idx <- sample(ncol(dds), nrow(dds)/2, TRUE)
counts(dds)[cbind(1:(nrow(dds)/2), idx)] <- 10000L
mcols(dds)$dispFit <- .5
expect_warning({ rld <- rlog(dds, blind=FALSE) })
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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