README.md
In nnavarro/shapeQTL: shape QTL mapping experiment using R
R/shapeQTL: shape QTL mapping experiment with R
R/shapeQTL is an R package to perform
statistical analyses to map quantitative trait locus for geometric morphometric data
Geometric morphometrics defines shape as a multivariate trait. Gene pleiotropy on landmark coordinates is the
underlying genetic model by definition and multivariate methods are required to map QTL. The package provides
Haley-Knott mapping for shape data derived from other R packages: R/geomorph,
R/Morpho, R/Momocs or other open source
softwares for geometric morphometrics : e.g., Java/MorphoJ, and for genotype probabilities derived from specific packages
depending on the type of crosses (for example calc.genoprob from R/qtl for inbred strains).
Installation
Install R/shapeQTL from its GitHub repository.
Install prerequisites
Install devtools package.
install.packages("devtools")
Then install R/shapeQTL
require(devtools)
install_github("nnavarro/shapeQTL")
nnavarro/shapeQTL documentation built on April 30, 2021, 12:10 p.m.
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
R/shapeQTL: shape QTL mapping experiment with R
R/shapeQTL is an R package to perform statistical analyses to map quantitative trait locus for geometric morphometric data
Geometric morphometrics defines shape as a multivariate trait. Gene pleiotropy on landmark coordinates is the underlying genetic model by definition and multivariate methods are required to map QTL. The package provides Haley-Knott mapping for shape data derived from other R packages: R/geomorph, R/Morpho, R/Momocs or other open source softwares for geometric morphometrics : e.g., Java/MorphoJ, and for genotype probabilities derived from specific packages depending on the type of crosses (for example calc.genoprob from R/qtl for inbred strains).
Installation
Install R/shapeQTL from its GitHub repository.
Install prerequisites
Install devtools package.
install.packages("devtools")
Then install R/shapeQTL
require(devtools)
install_github("nnavarro/shapeQTL")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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