effectsizeShape: Effect size for multivariate shape vector

In nnavarro/shapeQTL: shape QTL mapping experiment using R

Description

Compute the effect size of qtl effect.

Usage

effectsizeShape(qtl, shape = NULL, geno = NULL, ...)

Arguments

qtl	A qtl effect obtained from fitqtlShape
shape	A optional matrix of shape variables [n.ind n.pheno]
geno	A optional matrix of genotype data [n.ind n.qtl]

Details

Function takes a qtl object, and an optionally a shape matrix.

Value

The function returns the effect size of qtls.

Note

If the shape matrix and/or the genotypes are provided, then the function returns a dataframe with the ES standardized by genotype variance and the percentage explained of variance of the projection scores.

Author(s)

Nicolas Navarro

Examples

ES <- effectsizeShape(qtl, shape, geno = as.matrix(getGeno(cross, qtl)))

nnavarro/shapeQTL documentation built on April 30, 2021, 12:10 p.m.