Description Usage Arguments Details Value Note Author(s) Examples
View source: R/qtleffect_shape.R
Compute the effect size of qtl effect.
1 | effectsizeShape(qtl, shape = NULL, geno = NULL, ...)
|
qtl |
A qtl effect obtained from fitqtlShape |
shape |
A optional matrix of shape variables [n.ind n.pheno] |
geno |
A optional matrix of genotype data [n.ind n.qtl] |
Function takes a qtl object, and an optionally a shape matrix.
The function returns the effect size of qtls.
If the shape matrix and/or the genotypes are provided, then the function returns a dataframe with the ES standardized by genotype variance and the percentage explained of variance of the projection scores.
Nicolas Navarro
1 | ES <- effectsizeShape(qtl, shape, geno = as.matrix(getGeno(cross, qtl)))
|
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.