API for nolanlab/scaffold
SCAFFoLD
| Global functions | |
|---|---|
| adaptive_expand | Source code |
| add_attractors_labels | Source code |
| add_inter_clusters_connections | Source code |
| add_missing_columns | Source code |
| add_vertices_to_attractors_graph | Source code |
| build_graph | Source code |
| check_names | Source code |
| cluster_data | Source code |
| cluster_fcs_files_groups | Source code |
| cluster_fcs_files_in_dir | Source code |
| complete.forceatlas2 | Source code |
| convert_fcs | Source code |
| cosine_similarity_from_matrix | Source code |
| cosine_similarity_matrix | Source code |
| density_scatterplot | Source code |
| distance_from_attractor_hard_filter | Source code |
| downsample_by | Source code |
| export_clusters | Source code |
| filter_similarity_matrix | Source code |
| filter_similarity_matrix_by_rank | Source code |
| filter_small_populations | Source code |
| get_attractors_from_graph_clustering | Source code |
| get_celltype_medians | Source code |
| get_color_for_marker | Source code |
| get_dataset_statistics | Source code |
| get_distances_from_attractors | Source code |
| get_fcs_col_names | Source code |
| get_graph | Source code |
| get_graph_centering_transform | Source code |
| get_graph_table | Source code |
| get_highest_scoring_edges | Source code |
| get_number_of_cells_per_landmark | Source code |
| get_numeric_vertex_attributes | Source code |
| get_stats_by_sample | Source code |
| get_summary_table | Source code |
| get_vertex_size | Source code |
| get_vertex_table | Source code |
| layout.forceatlas2 | Source code |
| layout_forceatlas2Cpp | Source code |
| load_attractors_from_gated_data | Source code |
| load_existing_layout | Source code |
| mark_nearest_neighbour | Source code |
| my_load | Source code Source code |
| my_save | Source code |
| names_map_factory | Source code |
| plot_cluster | Source code |
| process_data | Source code |
| process_file | Source code |
| process_files | Source code |
| process_files_groups | Source code |
| rescale_size | Source code |
| run_analysis_existing | Source code |
| run_analysis_gated | Source code |
| run_analysis_unsupervised | Source code |
| scaffold | Man page |
| scaffold-package | Man page |
| scaffold.run | Source code |
| set_visual_attributes | Source code |
