API for nolanlab/scaffold
SCAFFoLD

Global functions
adaptive_expand Source code
add_attractors_labels Source code
add_inter_clusters_connections Source code
add_missing_columns Source code
add_vertices_to_attractors_graph Source code
build_graph Source code
check_names Source code
cluster_data Source code
cluster_fcs_files_groups Source code
cluster_fcs_files_in_dir Source code
complete.forceatlas2 Source code
convert_fcs Source code
cosine_similarity_from_matrix Source code
cosine_similarity_matrix Source code
density_scatterplot Source code
distance_from_attractor_hard_filter Source code
downsample_by Source code
export_clusters Source code
filter_similarity_matrix Source code
filter_similarity_matrix_by_rank Source code
filter_small_populations Source code
get_attractors_from_graph_clustering Source code
get_celltype_medians Source code
get_color_for_marker Source code
get_dataset_statistics Source code
get_distances_from_attractors Source code
get_fcs_col_names Source code
get_graph Source code
get_graph_centering_transform Source code
get_graph_table Source code
get_highest_scoring_edges Source code
get_number_of_cells_per_landmark Source code
get_numeric_vertex_attributes Source code
get_stats_by_sample Source code
get_summary_table Source code
get_vertex_size Source code
get_vertex_table Source code
layout.forceatlas2 Source code
layout_forceatlas2Cpp Source code
load_attractors_from_gated_data Source code
load_existing_layout Source code
mark_nearest_neighbour Source code
my_load Source code Source code
my_save Source code
names_map_factory Source code
plot_cluster Source code
process_data Source code
process_file Source code
process_files Source code
process_files_groups Source code
rescale_size Source code
run_analysis_existing Source code
run_analysis_gated Source code
run_analysis_unsupervised Source code
scaffold Man page
scaffold-package Man page
scaffold.run Source code
set_visual_attributes Source code
nolanlab/scaffold documentation built on Aug. 17, 2018, 2 p.m.