queryCpDistLw: queryCpDistLw

In noriakis/CBNplot: plot bayesian network inferred from gene expression data based on enrichment analysis results

queryCpDistLw

Description

produce a plot of bnlearn::cpdist by performing bnlearn::cpdist on specified node, evidence and level.

Usage

queryCpDistLw(
  fitted,
  candidate,
  evidence,
  levels,
  point = FALSE,
  pointSize = 5,
  alpha = TRUE,
  ...
)

Arguments

fitted	bn.fit object
candidate	name of node
evidence	evidence variable name
levels	level to be listed
point	geom_point the weighted mean
pointSize	point size for geom_point
alpha	whether to reflect the weights by alpha (TRUE) or color (FALSE)
...	other parameters passed to bnlearn cpdist

Value

list of dataframe containing raw values

Examples

library(bnlearn)
data("exampleEaRes")
data("exampleGeneExp")
net <- bngeneplot(exampleEaRes, exampleGeneExp,
                  pathNum=1, returnNet=TRUE)
fitted <- bn.fit(net$av, net$df)
res <- queryCpDistLw(fitted, candidate="ERCC4", evidence="ERCC2",
                     levels=c(0.1, 0.5, 0.8), n=500)

noriakis/CBNplot documentation built on Oct. 10, 2024, 12:21 p.m.