Man pages for noush-joglekar/scisorseqr
Processes long reads for differential isoform analysis
| correctedBed2AllInfo | Make a "corrected" version of the All-Info file after using... |
| DiffSplicingAnalysis | Perform differential splicing analysis |
| ExonQuant | Count exon inclusion and exclusion according to grouping... |
| FilterBCOutput | Filter unbarcoded reads |
| GetBarcodes | Get single-cell barcodes from long read files |
| GO.Reference | Conducts gene set enrichment analysis of significantly... |
| hello | Hello, World! |
| InfoPerLongRead | Combine all available information per read to a flat file |
| IsoQuant | Quantifies full-length isoforms in sample(s) |
| MakeMatrices | Generate matrices for clustering analysis |
| MapAndFilter | Extract isoform information from aligned reads |
| MMalign | Align fastq.gz files with Minimap2 |
| pipe | Pipe operator |
| sigSplitPie | Creates a piechart of number of isoforms needed to cross... |
| STARalign | Align fastq.gz files with STARlong |
| triHeatmap | Creates a heatmap of DIE abundance across comparisons |
