GO.Reference: Conducts gene set enrichment analysis of significantly...

In noush-joglekar/scisorseqr: Processes long reads for differential isoform analysis

Conducts gene set enrichment analysis of significantly spliced genes

Description

An easy way to look for enriched genes in the differential splicing analysis. Uses the ClusterProfiler package to compare geneset against the reference genome and outputs an .Robj file along with .pdf network graphs

Usage

GO.Reference('./','TreeTraversal_Iso/')

Arguments

working_directory	where the OutputGO folder should be created. Defaults to current working directory
comparisonsDir	location of TreeTraversal folder containing output files from differential isoform expression analysis

Value

OutputGO containing folders for Molecular Function, Biological Process, and Cellular Component

.Robj files for MF, BP, and CC

See Also

https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html

noush-joglekar/scisorseqr documentation built on March 18, 2023, 8:06 p.m.