PlotGrowth: Fish Toxicity Translator: Plotting Functions

In npollesch/FishToxTranslator: The Fish Toxicity Translator

Description

This group of functions are used for plotting various components of the FishToxTranslator model

Usage

PlotGrowth(pars, date, sizesToPlot = 100, bt = 0, plotSDevs = T)

PlotSurvival(pars, date, sizesToPlot = 100)

PlotReproduction(pars, date, sizesToPlot = 100)

PlotSpawningProbs(pars)

PlotSurvivalDecrements(pars)

PlotGrowthPercents(pars)

PlotExposureConcentrations(pars)

Arguments

pars	A date indexed FishToxTranslator parameter data.frame() or list of data.frames
date	Ordinal date used to access date specific FishToxTranslator parameters
sizesToPlot	Number size classes/divisions to plot between the lower and upper size limits. Default=100.
bt	For [PlotGrowth], Population biomass for date plotted. These values are produced as an output from SimulateModel(), but can be input for explore different density dependent growth. Default value is 0 to represent density independence.
plotSDevs	For [PlotGrowth], T/F for including standard deviations of daily growth increments in the plot

Value

Returns a plot for visualization of FishToxTranslator model outputs and functions

Functions

• PlotGrowth: This function plots the daily growth function by showing mean daily growth increment and standard deviation by size

• PlotSurvival: This function plots the daily survival probability by size

• PlotReproduction: This function plots the daily size-dependent reproductive output of females per female per day

• PlotSpawningProbs: This function plots daily spawning probability

• PlotSurvivalDecrements: This function plots daily survival decrements

• PlotGrowthPercents: This function plots daily growth percents

• PlotExposureConcentrations: This function plots daily exposure concentrations

npollesch/FishToxTranslator documentation built on May 23, 2021, 3:21 a.m.