SummaryTable: Fish Toxicity Translator: Model Results Functions

In npollesch/FishToxTranslator: The Fish Toxicity Translator

Description

This group of functions are used for summarizing results from Fish Toxicity Translator model runs

Usage

SummaryTable(modelOutputList)

SummaryMatrix(modelOutputList)

PlotSummaryMatrix(modelOutputList)

PlotBiomass(modelOutputList)

PlotPopulation(modelOutputList)

PlotMeanSize(modelOutputList)

PlotGrowthPotential(modelOutputList)

KernelImage(
  A,
  x = NULL,
  y = NULL,
  col = rev(colorRampPalette(c("red", "yellow", "green", "blue", "white"))(100)),
  just.legend = FALSE,
  bw = FALSE,
  my.x.axis = NA,
  matLabels = NULL,
  do.contour = TRUE,
  do.legend = TRUE,
  ...
)

PlotTransitionKernel(modelOutputList)

FormatExportScenario(
  scenarioToExport,
  parsList = parameters,
  descList = scenarioDescriptions
)

FormatExportResults(
  runID,
  scenarioID,
  scenDescList = scenarioDescriptions,
  resultsList = modelRuns,
  runInfoList = modelRunInfo
)

Arguments

modelOutputList

A list object with the output from SimulateModel. This can be a single SimulateModel output or a list of SimulateModel output lists.

Value

Creates various model result summary objects or plots for Fish Toxicity Translator model scenario runs.

Functions

• SummaryTable: provides a data.frame() with summary results for each model output from the SimulateModel result stored in the 'modelOutputList'

• SummaryMatrix: Function creates a list of matrices for comparing each SummaryTable element to corresponding summary elements from each scenario included in 'modelOutputList'

• PlotSummaryMatrix: Function creates a series of plot.matrix images to compare each SummaryTable element to corresponding summary elements from each scenario included in 'modelOutputList'

• PlotBiomass: Function plots daily biomass results

• PlotPopulation: Function plots daily population projection results

• PlotMeanSize: Function plots the daily mean size of individuals in the population

• PlotGrowthPotential: This function plots the daily minimum and maximum column sums to provide bounds on growth potential

• KernelImage: Function to plot discretized transition kernels

• PlotTransitionKernel: Function plots cumulative discretized transition Kernels

• FormatExportScenario: Formats scenario parameters for exporting to excel documents

• FormatExportResults: Formats results parameters for exporting to excel documents

npollesch/FishToxTranslator documentation built on May 23, 2021, 3:21 a.m.