plotCoverage: plotCoverage
In nriddiford/cnvPlotteR: Plotting functions for CNV data
Description
Usage
Arguments
Examples
Description
Function to plot raw coverage for a tumour/normal sample
Usage
1
2
plotCoverage(counts_file = "data/counts/A785-A788R11.tagged.SC.hits.filt-vs-A785-A788R12.tagged.SC.hits.filt.window-50000.minw-4.count",
readLength = 100, windowSize = 10000)
Arguments
counts_file
File to plot. [Required]
readLength
Specifiy the length of read [Default 100]
windowSize
Specifiy the window size used [Default 50000]
Examples
1
plotCoverage(counts_file = 'data/counts/A785-A788R11.tagged.SC.hits.filt-vs-A785-A788R12.tagged.SC.hits.filt.window-50000.minw-4.count', readLength=100,windowSize = 50000)
nriddiford/cnvPlotteR documentation built on Aug. 28, 2020, 5:31 a.m.
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Description Usage Arguments Examples
Description
Function to plot raw coverage for a tumour/normal sample
Usage
1 2 | plotCoverage(counts_file = "data/counts/A785-A788R11.tagged.SC.hits.filt-vs-A785-A788R12.tagged.SC.hits.filt.window-50000.minw-4.count",
readLength = 100, windowSize = 10000)
|
Arguments
counts_file |
File to plot. [Required] |
readLength |
Specifiy the length of read [Default 100] |
windowSize |
Specifiy the window size used [Default 50000] |
Examples
1 | plotCoverage(counts_file = 'data/counts/A785-A788R11.tagged.SC.hits.filt-vs-A785-A788R12.tagged.SC.hits.filt.window-50000.minw-4.count', readLength=100,windowSize = 50000)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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