AMMIplot: AMMIplot function

In nsantantonio/Bilinear: Fits bilinear models for multi environment trial data

Description

This function will make linear and winner plots from a bilinear() object like Figure 2 and Figure 3 of Gauch & Zobel (1997).

Usage

AMMIplot(bilinearObject, plots = "linear", color = c("darkgreen",
  "darkblue"), PC = 1, f = 0.5, ...)

Arguments

bilinearObject	object from output of a call to biliner()
plots	character vector of maximum length 2 containing the names of the plots to be produced. Possible arguments are "linear" and "winner". If both are specified in a single call, both plots will be plotted to the same device
color	character vector of length 2 containing colors for the plots. The first specifies the genotype color and the second the environment color. If only one color is specified, only genotypes will be colored
PC	integer. Principal component to plot. The default is 1
f	numeric. Scale parameter in (0, 1) for exponent on eigenvalues for weighting the genotype scores. Environment scores are weighted 1 - f. Default is 0.5
...	Additional arguments.

Details

Many arguments can be passed on to plot() through (...)

Examples

data(soyMeanMat)
AMMIfit <- bilinear(x = soyMeanMat)
AMMIplot(AMMIfit)
AMMIplot(AMMIfit, "winner")
AMMIplot(AMMIfit, "winner", color = "hotpink")
AMMIplot(AMMIfit, c("linear", "winner"), color = c("hotpink", "darkorchid"))

nsantantonio/Bilinear documentation built on Aug. 18, 2020, 2:31 p.m.