In nturaga/BiocNimfa: Bioconductor package to interface with python package Nimfa

Introduction

The BiocNimfa package is being used to test the Bioconductor build system. BiocNimfa package wraps a python package nimfa which is used for nonnegative matrix factorization.

Quick Example

library(BiocNimfa)
nimfa = nimfa()
v <- nimfa$examples$medulloblastoma$read(normalize=TRUE)
lsnmf <- nimfa$Lsnmf(v, seed="random_vcol", rank=50L, max_iter=100L)
lsnmf_fit <- lsnmf()
lsnmf_fit$fit$rss()

Session info {.unnumbered}

sessionInfo()

nturaga/BiocNimfa documentation built on May 3, 2019, 3:41 p.m.