In nullranges/nullrangesData: ExperimentHub datasets for the nullranges package

The nullrangesData package provides datasets for the nullranges package vignette, in particular example datasets for exclusion regions, DNase hypersensitivity sites (DHS), Single Cell Multiome ATAC and Gene Expression assay, CTCF binding sites, and CTCF genomic interactions.

library(nullrangesData)
suppressPackageStartupMessages(library(GenomicRanges))
suppressPackageStartupMessages(library(InteractionSet))

A549 DHS peaks (see ?DHSA549Hg38 for details).

dhs <- DHSA549Hg38()
dhs

Chromium Single Cell Multiome ATAC + Gene Expression assay. See corresponding man pages for details..

data("sc_rna")
data("sc_promoter")
sc_rna
sc_promoter

CTCF binding sites, 10kb bins with CTCF and DHS peaks, and CTCF-bound genomics interactions. See corresponding man pages for details.

bins <- hg19_10kb_bins()
binPairs <- hg19_10kb_ctcfBoundBinPairs()
bins
binPairs

Session information

sessionInfo()

nullranges/nullrangesData documentation built on Feb. 3, 2023, 12:28 p.m.