hg19_10kb_bins: 10Kb bins from hg19 with GM12878 metadata annotation features
In nullranges/nullrangesDataArchived: ExperimentHub datasets for the nullranges package
Description
10Kb bins were tiled across hg19 and annotated with CTCF and DNase
site features from GM12878. Feature annotations for each bin
include 1) the number of CTCF sites, 2) the CTCF signal strength
(from peak calls), 3) the number of DNase sites, 4) the DNase
signal strength (from signal tracks), and finally 5) the
presence/absence of a loop to any other bin. Function returns
a GRanges object with covariate metadata
Examples
1
2
bins <- hg19_10kb_bins()
bins
nullranges/nullrangesDataArchived documentation built on Jan. 7, 2022, 12:26 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
10Kb bins were tiled across hg19 and annotated with CTCF and DNase site features from GM12878. Feature annotations for each bin include 1) the number of CTCF sites, 2) the CTCF signal strength (from peak calls), 3) the number of DNase sites, 4) the DNase signal strength (from signal tracks), and finally 5) the presence/absence of a loop to any other bin. Function returns a GRanges object with covariate metadata
Examples
1 2 | bins <- hg19_10kb_bins()
bins
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.