hg19_10kb_ctcfBoundBinPairs: CTCF-bound 10Kb paired genomic interactions

In nullranges/nullrangesDataArchived: ExperimentHub datasets for the nullranges package

Description

10Kb bins were tiled across hg19 then subset by those which contained CTCF sites. All pairs of CTCF-bound 10Kb bins were generated and annotated with feature overlaps from GM12878. Feature annotations include 1) presence/absence of a loop between bin-pairs, 2) the total CTCF signal from both bin-pairs, 3) the number of CTCF sites from both bin-pairs, 4) the distance between bin-pairs, and finally 4) whether a convergent set of CTCF sites exists between bin-pairs. Function returns a GInteractions object with covariate metadata

Examples

binPairs <- hg19_10kb_ctcfBoundBinPairs()
binPairs

nullranges/nullrangesDataArchived documentation built on Jan. 7, 2022, 12:26 a.m.