CTCF_hg19: Predicted CTCF-motif binding sites
In nullranges/nullrangesOldData: Datasets for the nullranges package
Description
Usage
Format
References
Description
Genomic coordinates of predicted CTCF binding sites with motif
MA0139.1 (Jaspar), in BED format, with strand orientation
(directionality of binding). Human (hg19, hg38) and mouse (mm9,
mm10) genomes. The binding sites were detected using the FIMO tool
of the MEME suite using default settings. Extra columns include
motif name (MA0139.1), score, p-value, q-value, and the motif
sequence.
Usage
1
data("CTCF_hg19")
Format
a GRanges object
References
Dozmorov MG (2021). CTCF. https://github.com/mdozmorov/CTCF/CTCF - R
package version 0.99.0, <URL: https://github.com/mdozmorov/CTCF>.
nullranges/nullrangesOldData documentation built on Dec. 22, 2021, 3:19 a.m.
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Description Usage Format References
Description
Genomic coordinates of predicted CTCF binding sites with motif MA0139.1 (Jaspar), in BED format, with strand orientation (directionality of binding). Human (hg19, hg38) and mouse (mm9, mm10) genomes. The binding sites were detected using the FIMO tool of the MEME suite using default settings. Extra columns include motif name (MA0139.1), score, p-value, q-value, and the motif sequence.
Usage
1 | data("CTCF_hg19")
|
Format
a GRanges object
References
Dozmorov MG (2021). CTCF. https://github.com/mdozmorov/CTCF/CTCF - R package version 0.99.0, <URL: https://github.com/mdozmorov/CTCF>.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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