hg19_10kb_ctcfBoundBinPairs: CTCF-bound 10Kb paired genomic interactions

Description Usage Format

Description

10Kb bins were tiled across hg19 then subset by those which contained CTCF sites. All pairs of CTCF-bound 10Kb bins were generated and annotated with feature overlaps from GM12878. Feature annotations include 1) presence/absence of a loop between bin-pairs, 2) the total CTCF signal from both bin-pairs, 3) the number of CTCF sites from both bin-pairs, 4) the distance between bin-pairs, and finally 4) whether a convergent set of CTCF sites exists between bin-pairs.

Usage

1
data("hg19_10kb_ctcfBoundBinPairs")

Format

a GInteractions object with covariate metadata


nullranges/nullrangesOldData documentation built on Dec. 22, 2021, 3:19 a.m.