10Kb bins were tiled across hg19 then subset by those which contained CTCF sites. All pairs of CTCF-bound 10Kb bins were generated and annotated with feature overlaps from GM12878. Feature annotations include 1) presence/absence of a loop between bin-pairs, 2) the total CTCF signal from both bin-pairs, 3) the number of CTCF sites from both bin-pairs, 4) the distance between bin-pairs, and finally 4) whether a convergent set of CTCF sites exists between bin-pairs.
1 | data("hg19_10kb_ctcfBoundBinPairs")
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a GInteractions object with covariate metadata
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