Man pages for nuriamw/micro4all
Microbiome for all
| alpha_diversity_table | Diversity indexes from endosphere samples of olive trees. |
| ancomloop | ANCOM-BC analysis for multiple groups |
| ASV_final_table | ASV table from olive trees endosphere samples. |
| ASV_table_classified_raw | ASV table from olive trees endosphere samples without... |
| BalancedAnova | Execute balanced ANOVA for multiple indexes |
| Betadispersion | Multivariate homogeneity of groups dispersions for several... |
| dunnT | Dunn's Test for multiple variables |
| Kruskal.Wallis | Kruskal-Wallis Rank Sum Test for multiple variables |
| levene.test.alpha | Levene's test for multiple variables |
| location_phyloseq | Phyloseq object containing classification, abundance,... |
| metadata | Metadata table. |
| MockCommunity | Apply a cut-off based on Mock Community sequencing results |
| mock_composition | MOCK community composition table. |
| normalized_phyloseq | Phyloseq object containing classification, normalized... |
| PairwiseAdonisFun | Pairwise multilevel comparison using adonis over multiple... |
| Permanova | Permutational Multivariate Analysis of Variance along... |
| pipe | Pipe operator, in order to use %>% without refering to... |
| Shapiro | Shapiro-Wilk Normality test for multiple variables. |
| tree | Phylogenetic tree in phylo format. |
| Tukey.test | Multiple comparisons for multiple variables: balanced and... |
| UnbalancedAnova | Performs unbalanced ANOVA on a 'lm' model for several indexes |
| wilcoxon.test | Pairwise Wilcoxon Rank Sum Tests for multiple variables |
