Files in nvolkova/MutSim
Generating cancer mutations in genes according to mutational processes
.Rbuildignore
.gitignore
DESCRIPTION
MutSim.Rproj
NAMESPACE
R/MutSim.R
R/gene_features_class.R
R/generateMutations.R
R/utility_functions.R
README.md
generated_vs_real_mutations_in_NER_genes.pdf
man/GeneFeatures-class.Rd
man/MutSim.Rd
man/RevCom.Rd
man/RevComMutType.Rd
man/annotate_simulated_variants.Rd
man/cosine.Rd
man/gen_chrom-GeneFeatures-method.Rd
man/gen_chrom-set-GeneFeatures-character-method.Rd
man/gen_chrom-set.Rd
man/gen_chrom.Rd
man/generate_mutations.Rd
man/get_all_features.Rd
man/get_all_probabilities.Rd
man/get_chromosomes.Rd
man/min_ranges.Rd
man/name-GeneFeatures-method.Rd
man/name-set-GeneFeatures-character-method.Rd
man/name-set.Rd
man/name.Rd
man/positions-GeneFeatures-method.Rd
man/positions-set-GeneFeatures-numeric-method.Rd
man/positions-set.Rd
man/positions.Rd
man/tri.counts-GeneFeatures-method.Rd
man/tri.counts-set-GeneFeatures-numeric-method.Rd
man/tri.counts-set.Rd
man/tri.counts.Rd
man/trinucleotides-GeneFeatures-method.Rd
man/trinucleotides-set-GeneFeatures-character-method.Rd
man/trinucleotides-set.Rd
man/trinucleotides.Rd
man/upload_signatures.Rd
tests/testthat.R
vignettes/.gitignore
vignettes/mutsim-vignette.Rmd
