Files in nwfsc-assess/geostatistical_delta-GLMM
Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc)
.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/Build_TMB_Fn.R
R/Data_Fn.R
R/Make_Map.R
R/Param_Fn.R
R/SpatialDeltaGLMM.R
R/Summarize.R
R/zzz.R
README.md
examples/Exploratory_scripts/notes_for_SPDE.R
examples/SpatialDeltaGLMM_example.Rmd
examples/SpatialDeltaGLMM_example.pdf
examples/Surveys_available.R
examples/global_coverage.png
examples/helper_scripts/Example--simple.R
examples/helper_scripts/Format_data_for_Aleutian_Islands_example.R
examples/helper_scripts/Format_data_for_BCcoast_example.r
examples/helper_scripts/Format_data_for_BS_slope.R
examples/helper_scripts/Format_data_for_Bering_Sea_example.R
examples/helper_scripts/Format_data_for_Chatham_Rise_example.R
examples/helper_scripts/Format_data_for_GOM_example.R
examples/helper_scripts/Format_data_for_Gulf_St_Lawrence_example.R
examples/helper_scripts/Format_data_for_Gulf_of_Alaska_example.R
examples/helper_scripts/Format_data_for_HabCam_example.R
examples/helper_scripts/Format_data_for_Iceland_cod_example.R
examples/helper_scripts/Format_data_for_NWAtlantic_example.R
examples/helper_scripts/Format_data_for_New_Zealand_example.R
examples/helper_scripts/Format_data_for_SouthAfrica_example.R
examples/helper_scripts/Format_data_for_WCGBTS_example.R
examples/helper_scripts/Format_data_for_WCGHL_example.R
inst/CITATION
inst/executables/geo_index_v2i.cpp
inst/executables/geo_index_v2j.cpp
inst/executables/geo_index_v3a.cpp
inst/executables/geo_index_v3b.cpp
inst/executables/geo_index_v3c.cpp
inst/executables/geo_index_v3d.cpp
inst/executables/geo_index_v3e.cpp
inst/executables/geo_index_v3f.cpp
inst/executables/geo_index_v3g.cpp
inst/executables/geo_index_v3g_parallel.cpp
inst/executables/geo_index_v3h.cpp
inst/executables/geo_index_v3i.cpp
inst/executables/geo_index_v3j.cpp
inst/executables/geo_index_v3k.cpp
inst/executables/geo_index_v3l.cpp
inst/executables/geo_index_v3m.cpp
inst/executables/geo_index_v3n.cpp
inst/executables/geo_index_v4a.cpp
inst/executables/geo_index_v4b.cpp
inst/extdata/AI_POP/Kmeans-250.RData
inst/extdata/AI_POP/Record.RData
inst/extdata/AI_POP/opt.RData
inst/extdata/EBS_pollock/Kmeans-100.RData
inst/extdata/EBS_pollock/Record.RData
inst/extdata/EBS_pollock/opt.RData
inst/extdata/WCGBTS_canary/Kmeans-100.RData
inst/extdata/WCGBTS_canary/Record.RData
inst/extdata/WCGBTS_canary/opt.RData
inst/extdata/chatham_rise_hake/Kmeans-250.RData
inst/extdata/chatham_rise_hake/Record.RData
inst/extdata/chatham_rise_hake/opt.RData
man/Build_TMB_Fn.Rd
man/Check_encounter_prob.Rd
man/Data_Fn.Rd
man/MapDetails_Fn.Rd
man/Param_Fn.Rd
man/PlotAniso_Fn.Rd
man/PlotIndex_Fn.Rd
man/PlotResultsOnMap_Fn.Rd
man/Plot_Points_and_Bounds_Fn.Rd
man/Plot_data_and_knots.Rd
man/Plot_range_shifts.Rd
man/Prepare_Extrapolation_Data_Fn.Rd
man/QQ_Fn.Rd
man/SpatialDeltaGLMM.Rd
man/Spatial_Information_Fn.Rd
man/Summarize.Rd
man/plot_residuals.Rd
shiny/Acknowledgements_for_regional_inputs.csv
shiny/Compile_global_indices.R
shiny/Plot_Points_and_Bounds_Fn.R
shiny/Survey_names_and_codes.csv
shiny/rsconnect/shinyapps.io/james-thorson/shiny.dcf
shiny/server.R
shiny/testing_shiny.R
shiny/ui.R
tests/testthat.R
tests/testthat/test-AleutianPOP.R
tests/testthat/test-ChathamRiseHake.R
tests/testthat/test-EBSpollock.R
tests/testthat/test-WCGBTScanary.R
