tests/testthat.R

In nwfsc-assess/geostatistical_delta-GLMM: Package for conducting spatial estimation of CPUE index standardization (fisheries, ecology, etc)

library(testthat)
library(SpatialDeltaGLMM)
library(TMB)

# Use "extdata" in "inst" because its loaded with R packages
example_path <- system.file("extdata", package="SpatialDeltaGLMM")

# Automated testing
#setwd(system.file("tests", package="SpatialDeltaGLMM"))
testthat::test_check("SpatialDeltaGLMM")

###############
# Local testing
###############

# Use local path
#example_path <- "C:/Users/James.Thorson/Desktop/Project_git/geostatistical_delta-GLMM/inst/extdata/"

# Run from local directory
#testthat::test_dir( "C:/Users/James.Thorson/Desktop/Project_git/geostatistical_delta-GLMM/tests/testthat/", reporter="check" )
#testthat::test_dir( "/media/sf_c/Users/jim/Desktop/Project_git/FishData/tests/testthat/", reporter="check" )

# Full build check
#devtools::check( "C:/Users/James.Thorson/Desktop/Project_git/geostatistical_delta-GLMM/" )
#devtools::check( "/media/sf_c/Users/jim/Desktop/Project_git/FishData/ )

# Update documentation
#devtools::document( "C:/Users/James.Thorson/Desktop/Project_git/geostatistical_delta-GLMM/" )