DoApplyAgeError: Run the ageing error optimization routine

In nwfsc-assess/nwfscAgeingError: Estimating ageing error with 'TMB' from double reads

Run the ageing error optimization routine

Description

Run the ageing error optimization routine

Usage

DoApplyAgeError(
  Species = "AgeingError",
  DataSpecs,
  ModelSpecsInp,
  AprobWght = 1e-06,
  SlopeWght = 0.01,
  SaveDir = getwd(),
  verbose = FALSE
)

Arguments

Species	A string that will be used to create file names. Typically, users will use the common name for the species of interest, especially if you are saving files from multiple species in a single directory. Though, the default is "AgeingError".
DataSpecs	A data object returned from load_data().
ModelSpecsInp	A specification object returned from load_specs().
AprobWght, SlopeWght	Numeric values passed to the model. The defaults are 1e-06 and 0.01. Andre originally had these hard coded from his workspace. TODO: decide if they should be passed in the specifications or data files.
SaveDir	A path, relative or absolute, to a directory where the results will be saved. The directory need not exist currently as it will be created dynamically.
verbose	A logical specifying if messages should be printed. The default is to NOT print, i.e., verbose = FALSE.

Author(s)

Andre E. Punt

nwfsc-assess/nwfscAgeingError documentation built on July 4, 2025, 9:49 a.m.